example data set ?parkinsons (Phillippo 2020)
Friday 22 January 2021
network meta-analysis
way station
a stopping point on a journey
gaps in the toolchain
Cochrane reporting
Cochrane Handbook (Higgins et al. 2019)
extending the toolchain
Sensitivity: how much do the studies agree?
contributing
accessible pathways for all stakeholders
principal investigator
website + email
lead statistician
github issues public discussion forum
intrepid pdoc (that’s me!)
maintainer
contributing
computational collaborators
You are warmly encouraged to try, practice, and learn with me
library(usethis)
# create a fork and clone
create_from_github("softloud/nmareporting")
# create a branch for the specific contribution
pr_init("ecovignette")
#
# ecologist then writes vignette
#
# contribute the vignette to the code repository
pr_push()
#
# waits for maintainer to merge
#
# once the maintainer has merged
pr_finish()
usethis:: pull request workflow (Wickham and Bryan 2019)
manuscript
Thoughts, comments, and contributions welcome
- this talk is fully reproducible
- manuscript pdf
- reproducible source for manuscript
Thanks for listening :)
references
Higgins, Julian PT, James Thomas, Jacqueline Chandler, Miranda Cumpston, Tianjing Li, Matthew J Page, and Vivian A Welch. 2019. Cochrane Handbook for Systematic Reviews of Interventions. John Wiley & Sons.
Phillippo, David M. 2020. “Multinma: Network Meta-Analysis of Individual and Aggregate Data in Stan.” Manual. https://doi.org/10.5281/zenodo.3904454.
Wickham, Hadley, and Jennifer Bryan. 2019. Usethis: Automate Package and Project Setup. https://CRAN.R-project.org/package=usethis.